Slurm - Revision history

Pal: /* Submitting a job array */

2025-09-23T09:50:46Z

Submitting a job array

2025-09-23T09:48:27Z

Submitting a job array

2025-09-23T09:17:21Z

Submitting a job array

2025-09-23T09:03:28Z

Submitting a job array

2025-09-23T09:03:13Z

Submitting a job array

2025-09-23T09:02:18Z

Submitting a job array

2025-09-23T09:01:59Z

Submitting a job array

2025-09-23T09:01:43Z

Submitting a job array

2025-08-26T09:40:46Z

About

2025-08-26T09:40:15Z

About

@@ Line 140: / Line 140: @@
    srun /usr/bin/nice -n +19 ./script ${SLURM_ARRAY_TASK_ID}
 </pre>
-In this case, the script will use the command line parameter param to identify what is to be done (all programming languages have ways to access command line parameters, for isis, you might want to take a look at the cmdopt tool, for perl use Getopt::Long, for C use getopt or getopt_long in the Gnu C library, for python use the argparse module).
+In this case, the script will use the command line parameter to identify what is to be done (all programming languages have ways to access command line parameters, for isis, you might want to take a look at the cmdopt tool, for perl use Getopt::Long, for C use getopt or getopt_long in the Gnu C library, for python use the argparse module).

@@ Line 138: / Line 138: @@
    cd /home/user/script/
-   srun /usr/bin/nice -n +19 ./script --param=${SLURM_ARRAY_TASK_ID}
+   srun /usr/bin/nice -n +19 ./script ${SLURM_ARRAY_TASK_ID}
 </pre>
 In this case, the script will use the command line parameter param to identify what is to be done (all programming languages have ways to access command line parameters, for isis, you might want to take a look at the cmdopt tool, for perl use Getopt::Long, for C use getopt or getopt_long in the Gnu C library, for python use the argparse module).

@@ Line 124: / Line 124: @@
    srun /usr/bin/nice -n +19 ${COMMAND[$SLURM_ARRAY_TASK_ID]}
 </pre>
-Here 'nice' command is used to prioritized the current job submitted on the slurm.
+Here 'nice' command is used to prioritized your job.
 Note: It is often much better not to hard code the parameters of your job in the batch script, but to move that logic into the simulation script:

@@ Line 124: / Line 124: @@
    srun /usr/bin/nice -n +19 ${COMMAND[$SLURM_ARRAY_TASK_ID]}
 </pre>
-Here nice command is used to prioritized the current job submitted on the slurm.
+Here 'nice' command is used to prioritized the current job submitted on the slurm.
 Note: It is often much better not to hard code the parameters of your job in the batch script, but to move that logic into the simulation script:

@@ Line 126: / Line 126: @@
 Here nice command is used to prioritized the current job submitted on the slurm.
-Note that it is often much better not to hard code the parameters of your job in the batch script, but to move that logic into the simulation script:
+Note: It is often much better not to hard code the parameters of your job in the batch script, but to move that logic into the simulation script:
 <pre>
    #!/bin/bash

@@ Line 18: / Line 18: @@
 * erosita: only available for selected people involved in the project, timelimit: 7 days
 * dlr: only available for selected people involved in the project, timelimit: 7 days
-* gpu: available to anyone to run jobs on a GPU, can also be used for CPU jobs if remeis is full and there is no GPU job, timelimit: 24 hours
+* gpu: available to anyone to run jobs on a GPU, can also be used for CPU jobs if remeis is full and there is no GPU job (--partition=remeis,gpu), timelimit: 24 hours
 * debug: very high priority partition for software development, timelimit: 1h

@@ Line 15: / Line 15: @@
 The following partitions exist in the current setup:
-* remeis: default partition, all machines, timelimit: 7days
+* remeis: default partition, all machines, timelimit: 7 days
-* erosita: only available for selected people involved in the project, timelimit: infinite
+* erosita: only available for selected people involved in the project, timelimit: 7 days
 * debug: very high priority partition for software development, timelimit: 1h